diff --git a/.changeset/twelve-berries-cross.md b/.changeset/twelve-berries-cross.md
new file mode 100644
index 0000000000..9862f465d2
--- /dev/null
+++ b/.changeset/twelve-berries-cross.md
@@ -0,0 +1,5 @@
+---
+'@backstage/backend-app-api': patch
+---
+
+Make sure to not filter out schemas in `createConfigSecretEnumerator`
diff --git a/packages/backend-app-api/src/config/config.ts b/packages/backend-app-api/src/config/config.ts
index 8f98c5597c..7673ad3871 100644
--- a/packages/backend-app-api/src/config/config.ts
+++ b/packages/backend-app-api/src/config/config.ts
@@ -42,7 +42,7 @@ export async function createConfigSecretEnumerator(options: {
   const schema =
     options.schema ??
     (await loadConfigSchema({
-      dependencies: packages.map(p => p.packageJson.name).filter(() => false),
+      dependencies: packages.map(p => p.packageJson.name),
     }));
 
   return (config: Config) => {