diff --git a/.changeset/deprecate-proxy-bootstrap.md b/.changeset/deprecate-proxy-bootstrap.md
new file mode 100644
index 0000000000..178abdd39f
--- /dev/null
+++ b/.changeset/deprecate-proxy-bootstrap.md
@@ -0,0 +1,5 @@
+---
+'@backstage/cli-common': patch
+---
+
+Deprecated `bootstrapEnvProxyAgents()` in favor of Node.js built-in proxy support. Set `NODE_USE_ENV_PROXY=1` alongside your `HTTP_PROXY`/`HTTPS_PROXY` environment variables instead. See the [corporate proxy guide](https://backstage.io/docs/tutorials/corporate-proxy/) for details. This function will be removed in a future release.
diff --git a/packages/cli-common/report.api.md b/packages/cli-common/report.api.md
index ba649cacc9..b35985dd67 100644
--- a/packages/cli-common/report.api.md
+++ b/packages/cli-common/report.api.md
@@ -10,7 +10,7 @@ import { SpawnOptions } from 'node:child_process';
 // @public
 export const BACKSTAGE_JSON = 'backstage.json';
 
-// @public
+// @public @deprecated
 export function bootstrapEnvProxyAgents(): void;
 
 // @public
diff --git a/packages/cli-common/src/proxyBootstrap.test.ts b/packages/cli-common/src/proxyBootstrap.test.ts
index cefa1bd36e..a505ce477c 100644
--- a/packages/cli-common/src/proxyBootstrap.test.ts
+++ b/packages/cli-common/src/proxyBootstrap.test.ts
@@ -26,14 +26,17 @@ jest.mock('undici', () => ({
 
 describe('bootstrapEnvProxyAgents', () => {
   const originalEnv = process.env;
+  const originalExecArgv = process.execArgv;
 
   beforeEach(() => {
     jest.resetModules();
     process.env = { ...originalEnv };
+    process.execArgv = [...originalExecArgv];
   });
 
   afterEach(() => {
     process.env = originalEnv;
+    process.execArgv = originalExecArgv;
     jest.clearAllMocks();
   });
 
@@ -101,8 +104,153 @@ describe('bootstrapEnvProxyAgents', () => {
 
     const { bootstrap } =
       require('global-agent') as typeof import('global-agent');
+    const spy = jest.spyOn(process, 'emitWarning');
     bootstrapEnvProxyAgents();
 
     expect(bootstrap).toHaveBeenCalledTimes(1);
+    expect(spy).toHaveBeenCalledWith(
+      expect.stringContaining('CUSTOM_AGENT_*'),
+      expect.objectContaining({
+        type: 'DeprecationWarning',
+        code: 'BACKSTAGE_CLI_GLOBAL_AGENT_PROXY',
+      }),
+    );
+
+    spy.mockRestore();
+  });
+
+  it('should skip undici dispatcher but still bootstrap global-agent when NODE_USE_ENV_PROXY is set', () => {
+    process.env.GLOBAL_AGENT_HTTP_PROXY = 'http://proxy.example.com';
+    process.env.HTTP_PROXY = 'http://proxy.example.com';
+    process.env.NODE_USE_ENV_PROXY = '1';
+
+    const { bootstrap } =
+      require('global-agent') as typeof import('global-agent');
+    const { setGlobalDispatcher } =
+      require('undici') as typeof import('undici');
+    bootstrapEnvProxyAgents();
+
+    expect(bootstrap).toHaveBeenCalledTimes(1);
+    expect(setGlobalDispatcher).not.toHaveBeenCalled();
+  });
+
+  it('should skip undici dispatcher when --use-env-proxy is in execArgv', () => {
+    process.env.HTTP_PROXY = 'http://proxy.example.com';
+    process.execArgv = ['--use-env-proxy'];
+
+    const { setGlobalDispatcher } =
+      require('undici') as typeof import('undici');
+    bootstrapEnvProxyAgents();
+
+    expect(setGlobalDispatcher).not.toHaveBeenCalled();
+  });
+
+  it('should skip undici dispatcher when --use-env-proxy is in NODE_OPTIONS', () => {
+    process.env.HTTP_PROXY = 'http://proxy.example.com';
+    process.env.NODE_OPTIONS = '--use-env-proxy';
+
+    const { setGlobalDispatcher } =
+      require('undici') as typeof import('undici');
+    bootstrapEnvProxyAgents();
+
+    expect(setGlobalDispatcher).not.toHaveBeenCalled();
+  });
+
+  it('should emit a deprecation warning when standard proxy vars are set without NODE_USE_ENV_PROXY', () => {
+    process.env.HTTP_PROXY = 'http://proxy.example.com';
+    const spy = jest.spyOn(process, 'emitWarning');
+
+    bootstrapEnvProxyAgents();
+
+    expect(spy).toHaveBeenCalledWith(
+      expect.stringContaining('NODE_USE_ENV_PROXY=1'),
+      expect.objectContaining({
+        type: 'DeprecationWarning',
+        code: 'BACKSTAGE_CLI_PROXY_BOOTSTRAP',
+      }),
+    );
+
+    spy.mockRestore();
+  });
+
+  it('should not emit a deprecation warning when standard proxy vars are set with NODE_USE_ENV_PROXY', () => {
+    process.env.HTTP_PROXY = 'http://proxy.example.com';
+    process.env.NODE_USE_ENV_PROXY = '1';
+    const spy = jest.spyOn(process, 'emitWarning');
+
+    bootstrapEnvProxyAgents();
+
+    expect(spy).not.toHaveBeenCalled();
+
+    spy.mockRestore();
+  });
+
+  it('should not emit a deprecation warning when --use-env-proxy is in execArgv', () => {
+    process.env.HTTP_PROXY = 'http://proxy.example.com';
+    process.execArgv = ['--use-env-proxy'];
+    const spy = jest.spyOn(process, 'emitWarning');
+
+    bootstrapEnvProxyAgents();
+
+    expect(spy).not.toHaveBeenCalled();
+
+    spy.mockRestore();
+  });
+
+  it('should not emit a deprecation warning when --use-env-proxy is in NODE_OPTIONS', () => {
+    process.env.HTTP_PROXY = 'http://proxy.example.com';
+    process.env.NODE_OPTIONS = '--use-env-proxy';
+    const spy = jest.spyOn(process, 'emitWarning');
+
+    bootstrapEnvProxyAgents();
+
+    expect(spy).not.toHaveBeenCalled();
+
+    spy.mockRestore();
+  });
+
+  it('should emit a deprecation warning when GLOBAL_AGENT proxy vars are set', () => {
+    process.env.GLOBAL_AGENT_HTTP_PROXY = 'http://proxy.example.com';
+    const spy = jest.spyOn(process, 'emitWarning');
+
+    bootstrapEnvProxyAgents();
+
+    expect(spy).toHaveBeenCalledWith(
+      expect.stringContaining('GLOBAL_AGENT_*'),
+      expect.objectContaining({
+        type: 'DeprecationWarning',
+        code: 'BACKSTAGE_CLI_GLOBAL_AGENT_PROXY',
+      }),
+    );
+
+    spy.mockRestore();
+  });
+
+  it('should emit a deprecation warning for GLOBAL_AGENT proxy vars even with NODE_USE_ENV_PROXY', () => {
+    process.env.GLOBAL_AGENT_HTTP_PROXY = 'http://proxy.example.com';
+    process.env.NODE_USE_ENV_PROXY = '1';
+    const spy = jest.spyOn(process, 'emitWarning');
+
+    bootstrapEnvProxyAgents();
+
+    expect(spy).toHaveBeenCalledWith(
+      expect.stringContaining('GLOBAL_AGENT_*'),
+      expect.objectContaining({
+        type: 'DeprecationWarning',
+        code: 'BACKSTAGE_CLI_GLOBAL_AGENT_PROXY',
+      }),
+    );
+
+    spy.mockRestore();
+  });
+
+  it('should not emit a deprecation warning when no proxy vars are set', () => {
+    const spy = jest.spyOn(process, 'emitWarning');
+
+    bootstrapEnvProxyAgents();
+
+    expect(spy).not.toHaveBeenCalled();
+
+    spy.mockRestore();
   });
 });
diff --git a/packages/cli-common/src/proxyBootstrap.ts b/packages/cli-common/src/proxyBootstrap.ts
index b7375b6e55..23e40821f9 100644
--- a/packages/cli-common/src/proxyBootstrap.ts
+++ b/packages/cli-common/src/proxyBootstrap.ts
@@ -27,21 +27,49 @@
  * Make sure to call this function before any other imports.
  *
  * @public
+ * @deprecated Use Node.js built-in proxy support by setting `NODE_USE_ENV_PROXY=1`
+ * alongside your `HTTP_PROXY` / `HTTPS_PROXY` environment variables instead.
+ * This function will be removed in a future release.
+ * See {@link https://backstage.io/docs/tutorials/corporate-proxy/ | the corporate proxy guide} for details.
  */
 export function bootstrapEnvProxyAgents() {
-  // see https://www.npmjs.com/package/global-agent
   const globalAgentNamespace =
     process.env.GLOBAL_AGENT_ENVIRONMENT_VARIABLE_NAMESPACE ?? 'GLOBAL_AGENT_';
-  if (
+
+  const hasGlobalAgentProxy =
     process.env[`${globalAgentNamespace}HTTP_PROXY`] ||
-    process.env[`${globalAgentNamespace}HTTPS_PROXY`]
-  ) {
+    process.env[`${globalAgentNamespace}HTTPS_PROXY`];
+  const hasStandardProxy = process.env.HTTP_PROXY || process.env.HTTPS_PROXY;
+
+  // Mimics the internal getOptionValue('--use-env-proxy') check in Node.js, which
+  // normalizes the --use-env-proxy CLI flag and NODE_USE_ENV_PROXY=1 env var.
+  // https://github.com/nodejs/node/blob/v22.x/src/node_options.cc
+  const hasNodeEnvProxy =
+    process.env.NODE_USE_ENV_PROXY === '1' ||
+    process.execArgv.includes('--use-env-proxy') ||
+    (process.env.NODE_OPTIONS?.split(/\s+/) ?? []).includes('--use-env-proxy');
+
+  // Node.js never reads GLOBAL_AGENT_* vars, so global-agent must always
+  // handle those to preserve behavior during the deprecation period.
+  if (hasGlobalAgentProxy) {
+    process.emitWarning(
+      `Configuration of proxy agents through ${globalAgentNamespace}* environment variables is deprecated and will be removed in a future release. Switch to the standard HTTP_PROXY/HTTPS_PROXY environment variables and set NODE_USE_ENV_PROXY=1 instead. See https://backstage.io/docs/tutorials/corporate-proxy/ for details.`,
+      { type: 'DeprecationWarning', code: 'BACKSTAGE_CLI_GLOBAL_AGENT_PROXY' },
+    );
+
     const globalAgent =
       require('global-agent') as typeof import('global-agent');
     globalAgent.bootstrap();
   }
 
-  if (process.env.HTTP_PROXY || process.env.HTTPS_PROXY) {
+  // Skip undici dispatcher setup when Node.js built-in proxy support is active,
+  // as it already configures the global dispatcher during startup.
+  if (hasStandardProxy && !hasNodeEnvProxy) {
+    process.emitWarning(
+      'bootstrapEnvProxyAgents() is deprecated and will be removed in a future release. Set NODE_USE_ENV_PROXY=1 to use Node.js built-in proxy support instead. See https://backstage.io/docs/tutorials/corporate-proxy/ for details.',
+      { type: 'DeprecationWarning', code: 'BACKSTAGE_CLI_PROXY_BOOTSTRAP' },
+    );
+
     const { setGlobalDispatcher, EnvHttpProxyAgent } =
       require('undici') as typeof import('undici');
     setGlobalDispatcher(new EnvHttpProxyAgent());